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  5. Sobic.007G042600.1

Sobic.007G042600.1


Description : subfamily ABCB transporter


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.007G042600.1
Cluster HCAA Clusters: Cluster_275

Target Alias Description ECC score Gene Family Method Actions
Bradi3g06577 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
Brara.K00170.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
GRMZM2G167658 No alias ATP binding cassette subfamily B19 0.03 Orthogroups_2024-Update
Glyma.13G118500 No alias P-glycoprotein 11 0.03 Orthogroups_2024-Update
Glyma.16G078100 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
LOC_Os01g29870 No alias multidrug resistance protein 9, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os01g34970 No alias MDR-like ABC transporter, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g40570 No alias ABC transporter, ATP-binding protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_10436810g0020 No alias (at3g28345 : 992.0) ABC transporter family protein;... 0.03 Orthogroups_2024-Update
MA_107576g0010 No alias (q6yuu5|mdr_orysa : 852.0) Putative multidrug resistance... 0.03 Orthogroups_2024-Update
MA_62683g0010 No alias (at2g36910 : 1072.0) Belongs to the family of... 0.03 Orthogroups_2024-Update
MA_6870g0010 No alias (q6yuu5|mdr_orysa : 1284.0) Putative multidrug... 0.03 Orthogroups_2024-Update
PSME_00021941-RA No alias (at2g47000 : 947.0) Multidrug resistance P-glycoprotein... 0.03 Orthogroups_2024-Update
PSME_00023484-RA No alias (at2g36910 : 1766.0) Belongs to the family of... 0.02 Orthogroups_2024-Update
PSME_00035545-RA No alias (q6yuu5|mdr_orysa : 1259.0) Putative multidrug... 0.02 Orthogroups_2024-Update
PSME_00043262-RA No alias (at3g28345 : 1088.0) ABC transporter family protein;... 0.02 Orthogroups_2024-Update
Potri.011G133800 No alias P-glycoprotein 18 0.03 Orthogroups_2024-Update
Seita.1G055700.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Seita.1G145300.1 No alias subfamily ABCB transporter 0.07 Orthogroups_2024-Update
Sobic.003G180400.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Sobic.006G014800.1 No alias ABC-B-type transporter *(AMN3) & subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Solyc06g072960 No alias No description available 0.02 Orthogroups_2024-Update
Sopen09g003060 No alias ABC transporter transmembrane region 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0010181 FMN binding IEP Predicted GO
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 695 955
IPR011527 ABC1_TM_dom 57 330
IPR003439 ABC_transporter-like 397 546
IPR003439 ABC_transporter-like 1027 1176
No external refs found!