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  5. Sobic.007G050400.1

Sobic.007G050400.1


Description : RNA helicase *(RCF1)


Gene families : OG_42_0004785 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004785_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.007G050400.1
Cluster HCAA Clusters: Cluster_209

Target Alias Description ECC score Gene Family Method Actions
A4A49_22233 No alias dead-box atp-dependent rna helicase 45 0.02 Orthogroups_2024-Update
Cre16.g676400 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
HORVU0Hr1G020490.5 No alias RNA helicase *(RCF1) 0.03 Orthogroups_2024-Update
LOC_Os08g06344 No alias transposon protein, putative, CACTA, En/Spm sub-class, expressed 0.03 Orthogroups_2024-Update
Seita.6G053500.1 No alias RNA helicase *(RCF1) 0.04 Orthogroups_2024-Update
Sopen12g033450 No alias DEAD/DEAH box helicase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP Predicted GO
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0004476 mannose-6-phosphate isomerase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006361 transcription initiation from RNA polymerase I promoter IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006528 asparagine metabolic process IEP Predicted GO
BP GO:0006529 asparagine biosynthetic process IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0140223 general transcription initiation factor activity IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 674 779
IPR011545 DEAD/DEAH_box_helicase_dom 462 633
No external refs found!