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  5. Sobic.007G065700.1

Sobic.007G065700.1


Description : mCSF mitochondrial RNA splicing factor


Gene families : OG_42_0001286 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001286_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.007G065700.1
Cluster HCAA Clusters: Cluster_209

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G087395 No alias RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.03 Orthogroups_2024-Update
Kfl00188_0100 kfl00188_0100_v1.1 (at1g23400 : 154.0) Promotes the splicing of chloroplast... 0.02 Orthogroups_2024-Update
PSME_00011061-RA No alias (at2g20020 : 87.4) Promotes the splicing of chloroplast... 0.03 Orthogroups_2024-Update
Seita.6G039500.1 No alias mCSF mitochondrial RNA splicing factor 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004312 fatty acid synthase activity IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0009922 fatty acid elongase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 265 348
IPR001890 RNA-binding_CRM 145 230
No external refs found!