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  5. Sobic.007G085000.2

Sobic.007G085000.2


Description : component *(uL30) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001114 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001114_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.007G085000.2
Cluster HCAA Clusters: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Bradi1g04950 No alias Ribosomal protein L30/L7 family protein 0.02 Orthogroups_2024-Update
Bradi5g20900 No alias Ribosomal protein L30/L7 family protein 0.02 Orthogroups_2024-Update
Brara.B03026.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.D02679.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.F03496.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Brara.I02011.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Cre12.g537800 No alias Ribosomal protein L30/L7 family protein 0.02 Orthogroups_2024-Update
GRMZM5G868433 No alias Ribosomal protein L30/L7 family protein 0.04 Orthogroups_2024-Update
Glyma.07G020000 No alias Ribosomal protein L30/L7 family protein 0.02 Orthogroups_2024-Update
MA_109845g0010 No alias (at2g01250 : 278.0) Ribosomal protein L30/L7 family... 0.03 Orthogroups_2024-Update
MA_47548g0010 No alias (at2g01250 : 324.0) Ribosomal protein L30/L7 family... 0.03 Orthogroups_2024-Update
PSME_00002449-RA No alias (at2g01250 : 310.0) Ribosomal protein L30/L7 family... 0.02 Orthogroups_2024-Update
PSME_00040767-RA No alias (at2g01250 : 333.0) Ribosomal protein L30/L7 family... 0.02 Orthogroups_2024-Update
Potri.008G008000 No alias Ribosomal protein L30/L7 family protein 0.03 Orthogroups_2024-Update
Potri.010G250900 No alias Ribosomal protein L30/L7 family protein 0.02 Orthogroups_2024-Update
Pp1s243_40V6 No alias 60s ribosomal protein l7-2 0.05 Orthogroups_2024-Update
Pp1s7_369V6 No alias 60s ribosomal protein l7-2 0.04 Orthogroups_2024-Update
Seita.6G017200.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Seita.7G228400.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Solyc03g117060 No alias 60S ribosomal protein L7 (AHRD V3.3 *** B9GMC3_POPTR) 0.03 Orthogroups_2024-Update
Solyc07g008370 No alias 60S ribosomal protein L7 (AHRD V3.3 *** A0A072VPV6_MEDTR) 0.04 Orthogroups_2024-Update
Solyc08g075090 No alias bHLH transcription factor144 0.02 Orthogroups_2024-Update
Sopen07g004260 No alias Ribosomal L30 N-terminal domain 0.04 Orthogroups_2024-Update
Sopen08g023720 No alias Ribosomal L30 N-terminal domain 0.02 Orthogroups_2024-Update
Sopen12g032080 No alias Ribosomal L30 N-terminal domain 0.03 Orthogroups_2024-Update
evm.model.contig_2085.3 No alias (at3g13580 : 237.0) Ribosomal protein L30/L7 family... 0.05 Orthogroups_2024-Update
evm.model.tig00020909.42 No alias (at2g44120 : 205.0) Ribosomal protein L30/L7 family... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR012988 Ribosomal_L30_N 11 81
IPR016082 Ribosomal_L30_ferredoxin-like 87 137
No external refs found!