Description : Unknown function
Gene families : OG_42_0007361 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007361_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Sorghum bicolor: Sobic.007G087100.1 | |
Cluster | HCAA Clusters: Cluster_211 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
GRMZM2G103250 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU5Hr1G064130.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
LOC_Os09g25550 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
MA_187850g0010 | No alias | (at4g30825 : 404.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
Potri.006G005100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.07 | Orthogroups_2024-Update | |
Seita.7G074800.1 | No alias | Unknown function | 0.06 | Orthogroups_2024-Update | |
Solyc07g005950 | No alias | Pentatricopeptide repeat-containing protein, putative... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0002097 | tRNA wobble base modification | IEP | Predicted GO |
BP | GO:0002100 | tRNA wobble adenosine to inosine editing | IEP | Predicted GO |
MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
MF | GO:0004000 | adenosine deaminase activity | IEP | Predicted GO |
MF | GO:0004177 | aminopeptidase activity | IEP | Predicted GO |
CC | GO:0005777 | peroxisome | IEP | Predicted GO |
BP | GO:0006298 | mismatch repair | IEP | Predicted GO |
BP | GO:0006382 | adenosine to inosine editing | IEP | Predicted GO |
BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
BP | GO:0006553 | lysine metabolic process | IEP | Predicted GO |
MF | GO:0008251 | tRNA-specific adenosine deaminase activity | IEP | Predicted GO |
MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
MF | GO:0008839 | 4-hydroxy-tetrahydrodipicolinate reductase | IEP | Predicted GO |
BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | Predicted GO |
BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0009085 | lysine biosynthetic process | IEP | Predicted GO |
BP | GO:0009089 | lysine biosynthetic process via diaminopimelate | IEP | Predicted GO |
BP | GO:0016553 | base conversion or substitution editing | IEP | Predicted GO |
MF | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Predicted GO |
MF | GO:0016872 | intramolecular lyase activity | IEP | Predicted GO |
MF | GO:0019239 | deaminase activity | IEP | Predicted GO |
CC | GO:0019867 | outer membrane | IEP | Predicted GO |
CC | GO:0019898 | extrinsic component of membrane | IEP | Predicted GO |
MF | GO:0030983 | mismatched DNA binding | IEP | Predicted GO |
CC | GO:0042579 | microbody | IEP | Predicted GO |
MF | GO:0043169 | cation binding | IEP | Predicted GO |
BP | GO:0043648 | dicarboxylic acid metabolic process | IEP | Predicted GO |
BP | GO:0046451 | diaminopimelate metabolic process | IEP | Predicted GO |
MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 232 | 286 |
IPR002885 | Pentatricopeptide_repeat | 716 | 775 |
IPR002885 | Pentatricopeptide_repeat | 312 | 340 |
IPR002885 | Pentatricopeptide_repeat | 626 | 652 |
IPR002885 | Pentatricopeptide_repeat | 455 | 481 |
IPR002885 | Pentatricopeptide_repeat | 352 | 376 |
IPR002885 | Pentatricopeptide_repeat | 379 | 425 |
IPR002885 | Pentatricopeptide_repeat | 867 | 914 |
IPR002885 | Pentatricopeptide_repeat | 801 | 842 |
No external refs found! |