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  5. Sobic.007G132200.1

Sobic.007G132200.1


Description : DNA repair protein *(XPC)


Gene families : OG_42_0005999 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005999_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.007G132200.1
Cluster HCAA Clusters: Cluster_228

Target Alias Description ECC score Gene Family Method Actions
Kfl00146_0120 kfl00146_0120_v1.1 (at5g16630 : 387.0) RAD4; FUNCTIONS IN: damaged DNA... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004649 poly(ADP-ribose) glycohydrolase activity IEP Predicted GO
BP GO:0006282 regulation of DNA repair IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0080134 regulation of response to stress IEP Predicted GO
BP GO:0080135 regulation of cellular response to stress IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
BP GO:2001020 regulation of response to DNA damage stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR018328 Rad4_beta-hairpin_dom3 670 742
IPR018327 BHD_2 603 663
IPR018325 Rad4/PNGase_transGLS-fold 429 543
IPR018326 Rad4_beta-hairpin_dom1 549 598
No external refs found!