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  5. Sobic.007G149600.1

Sobic.007G149600.1


Description : histone *(H2B)


Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.007G149600.1
Cluster HCAA Clusters: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
182308 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
73644 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
At3g46030 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178VGU6] 0.04 Orthogroups_2024-Update
Bradi1g47980 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Brara.F01827.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
Brara.I03652.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
Cre06.g264800 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Cre06.g264900 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g265400 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g266750 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g268250 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g274250 No alias Histone superfamily protein 0.07 Orthogroups_2024-Update
Cre06.g274750 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Cre06.g276550 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g276900 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre12.g504700 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g505600 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre12.g506200 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre13.g570050 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre17.g708600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre17.g711750 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G046841 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G057852 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G141432 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G305027 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G306258 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G401147 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G472696 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G198500 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Glyma.11G142100 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G132100 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Glyma.20G191600 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G056530.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU1Hr1G066130.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU1Hr1G085540.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU3Hr1G013530.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
HORVU5Hr1G094500.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Kfl01110_0020 kfl01110_0020_v1.... (p16868|h2b4_volca : 167.0) Histone H2B.4 (H2B-IV) -... 0.01 Orthogroups_2024-Update
MA_77198g0010 No alias (at3g45980 : 157.0) Encodes a histone 2B (H2B) protein.... 0.03 Orthogroups_2024-Update
PSME_00000376-RA No alias (p54347|h2b4_chlre : 153.0) Histone H2B.4 (H2B-IV) -... 0.04 Orthogroups_2024-Update
Pp1s117_2V6 No alias histone h2b 0.04 Orthogroups_2024-Update
Seita.2G294900.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Sobic.003G067500.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Sobic.004G265400.1 No alias histone *(H2B) 0.05 Orthogroups_2024-Update
Sopen03g019890 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
Sopen05g033890 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
Sopen06g031230 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen06g032230 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen11g003790 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen11g026180 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen12g006850 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
evm.model.contig_498.4 No alias (p16868|h2b4_volca : 127.0) Histone H2B.4 (H2B-IV) -... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
BP GO:0017062 respiratory chain complex III assembly IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP Predicted GO
BP GO:0034551 mitochondrial respiratory chain complex III assembly IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 6 127
No external refs found!