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  5. Sobic.007G156400.1

Sobic.007G156400.1


Description : alpha amylase


Gene families : OG_42_0000605 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000605_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.007G156400.1
Cluster HCAA Clusters: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
At4g25000 No alias Alpha-amylase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ56] 0.03 Orthogroups_2024-Update
LOC_Os04g33040 No alias alpha-amylase precursor, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00011482-RA No alias (p27933|amy3d_orysa : 429.0) Alpha-amylase isozyme 3D... 0.03 Orthogroups_2024-Update
PSME_00034631-RA No alias (p27933|amy3d_orysa : 495.0) Alpha-amylase isozyme 3D... 0.03 Orthogroups_2024-Update
Seita.1G331000.1 No alias alpha amylase 0.03 Orthogroups_2024-Update
Seita.8G179800.1 No alias alpha amylase 0.04 Orthogroups_2024-Update
Sobic.002G190500.1 No alias alpha amylase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004556 alpha-amylase activity IEA 16Dec
MF GO:0005509 calcium ion binding IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006047 Glyco_hydro_13_cat_dom 56 224
IPR012850 A-amylase_bs_C 378 436
No external refs found!