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  5. Sobic.007G161000.1

Sobic.007G161000.1


Description : component *(SMC1/TTN8) of cohesin regulator complex


Gene families : OG_42_0004165 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004165_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Sorghum bicolor: Sobic.007G161000.1
Cluster HCAA Clusters: Cluster_234

Target Alias Description ECC score Gene Family Method Actions
Bradi3g12830 No alias Structural maintenance of chromosomes (SMC) family protein 0.05 Orthogroups_2024-Update
Cre15.g635800 No alias Structural maintenance of chromosomes (SMC) family protein 0.02 Orthogroups_2024-Update
Glyma.10G037300 No alias Structural maintenance of chromosomes (SMC) family protein 0.03 Orthogroups_2024-Update
Glyma.13G123700 No alias Structural maintenance of chromosomes (SMC) family protein 0.03 Orthogroups_2024-Update
Seita.6G255600.1 No alias component *(SMC1/TTN8) of cohesin regulator complex 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0005694 chromosome IEA 16Dec
BP GO:0051276 chromosome organization IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR010935 SMC_hinge 530 645
IPR003395 RecF/RecN/SMC_N 22 1213
No external refs found!