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  5. Sobic.007G182600.2

Sobic.007G182600.2


Description : Unknown function


Gene families : OG_42_0002530 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002530_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.007G182600.2
Cluster HCAA Clusters: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
Bradi4g03700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G077320 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.08G096900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
PSME_00024555-RA No alias (at4g02750 : 413.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
Potri.004G125500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Sobic.001G117600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc05g009400 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.07 Orthogroups_2024-Update
Sopen01g039950 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen05g005200 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
BP GO:0000726 non-recombinational repair IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 165 191
IPR002885 Pentatricopeptide_repeat 460 485
IPR002885 Pentatricopeptide_repeat 224 254
IPR002885 Pentatricopeptide_repeat 358 379
IPR002885 Pentatricopeptide_repeat 98 121
IPR002885 Pentatricopeptide_repeat 193 221
IPR002885 Pentatricopeptide_repeat 283 331
IPR002885 Pentatricopeptide_repeat 385 432
No external refs found!