Sobic.007G184600.2

Description : component *(eL38) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0001927 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001927_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.007G184600.2
Cluster	HCAA Clusters: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method
270247	No alias	Ribosomal L38e protein family	0.15	Orthogroups_2024-Update
A4A49_59471	No alias	60s ribosomal protein l38	0.13	Orthogroups_2024-Update
AC190609.3_FG002	No alias	Ribosomal L38e protein family	0.05	Orthogroups_2024-Update
At3g59540	No alias	60S ribosomal protein L38...	0.03	Orthogroups_2024-Update
Bradi1g25302	No alias	Ribosomal L38e protein family	0.14	Orthogroups_2024-Update
Bradi3g41837	No alias	Ribosomal L38e protein family	0.03	Orthogroups_2024-Update
Brara.C02203.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.11	Orthogroups_2024-Update
Brara.E00357.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.16	Orthogroups_2024-Update
Brara.I04090.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Cre07.g325746	No alias	Ribosomal L38e protein family	0.15	Orthogroups_2024-Update
Glyma.08G100000	No alias	Ribosomal L38e protein family	0.11	Orthogroups_2024-Update
HORVU2Hr1G043220.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Kfl00433_0040	kfl00433_0040_v1.1	(at3g59540 : 122.0) Ribosomal L38e protein family;...	0.06	Orthogroups_2024-Update
LOC_Os11g24610	No alias	60S ribosomal protein L38, putative, expressed	0.02	Orthogroups_2024-Update
MA_20588g0010	No alias	(at3g59540 : 129.0) Ribosomal L38e protein family;...	0.13	Orthogroups_2024-Update
Mp7g14520.1	No alias	component RPL38 of LSU proteome component	0.02	Orthogroups_2024-Update
PSME_00035421-RA	No alias	(at3g59540 : 127.0) Ribosomal L38e protein family;...	0.15	Orthogroups_2024-Update
Potri.007G131800	No alias	Ribosomal L38e protein family	0.1	Orthogroups_2024-Update
Potri.010G181200	No alias	Ribosomal L38e protein family	0.09	Orthogroups_2024-Update
Potri.017G020000	No alias	Ribosomal L38e protein family	0.05	Orthogroups_2024-Update
Pp1s227_122V6	No alias	60s ribosomal protein l38	0.15	Orthogroups_2024-Update
Pp1s288_10V6	No alias	60s ribosomal protein l38	0.17	Orthogroups_2024-Update
Pp1s46_212V6	No alias	60s ribosomal protein l38	0.04	Orthogroups_2024-Update
Pp1s67_172V6	No alias	60s ribosomal protein l38	0.15	Orthogroups_2024-Update
Seita.2G274700.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Seita.2G333600.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Seita.2G344700.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Seita.6G231700.1	No alias	component *(eL38) of large ribosomal-subunit (LSU) proteome	0.17	Orthogroups_2024-Update
Solyc05g055640	No alias	ARM repeat superfamily protein (AHRD V3.3 --* AT1G12930.1)	0.08	Orthogroups_2024-Update
Solyc11g008510	No alias	60S ribosomal protein L38 (AHRD V3.3 *** RL38_SOLLC)	0.15	Orthogroups_2024-Update
Sopen05g034080	No alias	Ribosomal L38e protein family	0.06	Orthogroups_2024-Update
Sopen11g004300	No alias	Ribosomal L38e protein family	0.19	Orthogroups_2024-Update
evm.model.tig00021719.6	No alias	(at3g59540 : 110.0) Ribosomal L38e protein family;...	0.17	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004332	fructose-bisphosphate aldolase activity	IEP	Predicted GO
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Predicted GO
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Predicted GO
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006486	protein glycosylation	IEP	Predicted GO
BP	GO:0006487	protein N-linked glycosylation	IEP	Predicted GO
CC	GO:0008250	oligosaccharyltransferase complex	IEP	Predicted GO
BP	GO:0009605	response to external stimulus	IEP	Predicted GO
BP	GO:0009607	response to biotic stimulus	IEP	Predicted GO
BP	GO:0009617	response to bacterium	IEP	Predicted GO
BP	GO:0009620	response to fungus	IEP	Predicted GO
MF	GO:0016780	phosphotransferase activity, for other substituted phosphate groups	IEP	Predicted GO
MF	GO:0016832	aldehyde-lyase activity	IEP	Predicted GO
BP	GO:0018196	peptidyl-asparagine modification	IEP	Predicted GO
BP	GO:0018279	protein N-linked glycosylation via asparagine	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0042742	defense response to bacterium	IEP	Predicted GO
BP	GO:0043207	response to external biotic stimulus	IEP	Predicted GO
BP	GO:0043413	macromolecule glycosylation	IEP	Predicted GO
CC	GO:0044425	membrane part	IEP	Predicted GO
CC	GO:0044432	endoplasmic reticulum part	IEP	Predicted GO
CC	GO:0044459	plasma membrane part	IEP	Predicted GO
BP	GO:0050832	defense response to fungus	IEP	Predicted GO
BP	GO:0051704	multi-organism process	IEP	Predicted GO
BP	GO:0051707	response to other organism	IEP	Predicted GO
BP	GO:0070085	glycosylation	IEP	Predicted GO
BP	GO:0098542	defense response to other organism	IEP	Predicted GO
CC	GO:0098796	membrane protein complex	IEP	Predicted GO
CC	GO:0098797	plasma membrane protein complex	IEP	Predicted GO
CC	GO:1902494	catalytic complex	IEP	Predicted GO
CC	GO:1990234	transferase complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002675	Ribosomal_L38e	48	115

External Links

No external refs found!

Sobic.007G184600.2

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation