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  5. Sobic.007G185900.1

Sobic.007G185900.1


Description : RBR-Ariadne-class E3 ubiquitin ligase


Gene families : OG_42_0000347 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000347_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.007G185900.1
Cluster HCAA Clusters: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
A4A49_14246 No alias putative e3 ubiquitin-protein ligase ari8 0.03 Orthogroups_2024-Update
Bradi3g41760 No alias IBR domain-containing protein 0.05 Orthogroups_2024-Update
GRMZM2G100913 No alias IBR domain-containing protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G055260.4 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.07 Orthogroups_2024-Update
Kfl00714_0020 kfl00714_0020_v1.1 (at1g65430 : 663.0) ARIADNE 8 (ARI8); FUNCTIONS IN:... 0.02 Orthogroups_2024-Update
LOC_Os04g41470 No alias expressed protein 0.03 Orthogroups_2024-Update
Potri.008G077100 No alias IBR domain-containing protein 0.06 Orthogroups_2024-Update
Potri.009G111200 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Potri.017G032000 No alias IBR domain-containing protein 0.02 Orthogroups_2024-Update
Pp1s6_282V6 No alias protein ariadne- 0.02 Orthogroups_2024-Update
Seita.9G483400.1 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Solyc01g109280 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT2G16090.4) 0.02 Orthogroups_2024-Update
Solyc06g073340 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G05890.1) 0.02 Orthogroups_2024-Update
Sopen11g004370 No alias IBR domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0004609 phosphatidylserine decarboxylase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002867 IBR_dom 291 339
IPR002867 IBR_dom 213 274
No external refs found!