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  5. Sobic.007G192900.1

Sobic.007G192900.1


Description : MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.007G192900.1
Cluster HCAA Clusters: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
A4A49_18078 No alias developmental protein sepallata 1 0.03 Orthogroups_2024-Update
A4A49_19521 No alias developmental protein sepallata 1 0.02 Orthogroups_2024-Update
A4A49_20590 No alias mads-box transcription factor 27 0.02 Orthogroups_2024-Update
At1g69120 No alias AP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W846] 0.03 Orthogroups_2024-Update
At2g45650 No alias AGAMOUS-like protein 6 [Source:UniProtKB/TrEMBL;Acc:Q1PEU3] 0.06 Orthogroups_2024-Update
Bradi1g69890 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Bradi2g38695 No alias MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Bradi2g43290 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Brara.H01136.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Brara.I02486.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.K00360.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G026223 No alias AGAMOUS-like 20 0.02 Orthogroups_2024-Update
GRMZM2G152862 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.05G163200 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.09G283800 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.13G034100 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.13G223300 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.13G256900 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G047560.2 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.03 Orthogroups_2024-Update
HORVU1Hr1G063620.2 No alias component *(PISTILLATA) of AP3-PISTILLATA organ-identity... 0.03 Orthogroups_2024-Update
LOC_Os04g38780 No alias transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g11414 No alias OsMADS58 - MADS-box family gene with MIKCc type-box, expressed 0.04 Orthogroups_2024-Update
LOC_Os07g41370 No alias OsMADS18 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g41960 No alias OsMADS37 - MADS-box family gene with MIKC* type-box, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g39130 No alias OsMADS56 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
MA_35712g0010 No alias (at4g11880 : 102.0) AGL12, AGL14, and AGL17 are all... 0.03 Orthogroups_2024-Update
MA_458668g0010 No alias (at2g45660 : 100.0) Controls flowering and is required... 0.03 Orthogroups_2024-Update
Potri.002G109601 No alias AGAMOUS-like 16 0.02 Orthogroups_2024-Update
Potri.004G131100 No alias AGAMOUS-like 29 0.04 Orthogroups_2024-Update
Potri.008G098500 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Potri.012G125600 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Potri.014G074200 No alias AGAMOUS-like 20 0.02 Orthogroups_2024-Update
Pp1s26_90V6 No alias agamous-like protein 0.03 Orthogroups_2024-Update
Pp1s55_280V6 No alias mikc* mads-box transcription factor 0.04 Orthogroups_2024-Update
Seita.1G272300.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Seita.4G177800.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.009G142500.1 No alias component *(PISTILLATA) of AP3-PISTILLATA organ-identity... 0.02 Orthogroups_2024-Update
Sobic.010G029200.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Solyc08g067230 No alias MADS box transcription factor (AHRD V3.3 *** G3EIU8_9SOLA) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 90 137
No external refs found!