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  5. Sobic.007G200400.1

Sobic.007G200400.1


Description : AS2/LOB-type transcription factor


Gene families : OG_42_0000073 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.007G200400.1
Cluster HCAA Clusters: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
A4A49_20931 No alias lob domain-containing protein 6 0.03 Orthogroups_2024-Update
Bradi2g25270 No alias Lateral organ boundaries (LOB) domain family protein 0.03 Orthogroups_2024-Update
Bradi2g57380 No alias Lateral organ boundaries (LOB) domain family protein 0.05 Orthogroups_2024-Update
Bradi4g44850 No alias Lateral organ boundaries (LOB) domain family protein 0.03 Orthogroups_2024-Update
LOC_Os12g01550 No alias DUF260 domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_113501g0010 No alias (at2g30130 : 200.0) Overexpression/activation tagged... 0.04 Orthogroups_2024-Update
MA_16891g0010 No alias (at5g63090 : 175.0) Involved in lateral organ... 0.03 Orthogroups_2024-Update
Potri.001G196400 No alias LOB domain-containing protein 22 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:0010038 response to metal ion IEP Predicted GO
BP GO:0016052 carbohydrate catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016755 transferase activity, transferring amino-acyl groups IEP Predicted GO
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
BP GO:0019748 secondary metabolic process IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044550 secondary metabolite biosynthetic process IEP Predicted GO
BP GO:0046937 phytochelatin metabolic process IEP Predicted GO
BP GO:0046938 phytochelatin biosynthetic process IEP Predicted GO
BP GO:0048364 root development IEP Predicted GO
BP GO:0048367 shoot system development IEP Predicted GO
BP GO:0048731 system development IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
BP GO:0099402 plant organ development IEP Predicted GO
InterPro domains Description Start Stop
IPR004883 LOB 30 127
No external refs found!