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  5. Sobic.007G203500.1

Sobic.007G203500.1


Description : ARF-type transcription factor & auxin signal mediator *(ARF7/ARF19)


Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.007G203500.1
Cluster HCAA Clusters: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
117217 No alias auxin response factor 6 0.02 Orthogroups_2024-Update
Bradi1g34340 No alias Transcriptional factor B3 family protein /... 0.03 Orthogroups_2024-Update
Bradi3g03407 No alias Transcriptional factor B3 family protein /... 0.01 Orthogroups_2024-Update
Bradi3g45880 No alias auxin response factor 1 0.05 Orthogroups_2024-Update
Brara.B03784.1 No alias ARF-type transcription factor 0.04 Orthogroups_2024-Update
Glyma.01G103500 No alias auxin response factor 9 0.04 Orthogroups_2024-Update
Glyma.05G200800 No alias auxin response factor 2 0.03 Orthogroups_2024-Update
Glyma.11G145500 No alias auxin response factor 10 0.02 Orthogroups_2024-Update
HORVU7Hr1G051930.1 No alias Unknown function 0.03 Orthogroups_2024-Update
PSME_00020341-RA No alias (at1g19220 : 630.0) Encodes an auxin response factor... 0.03 Orthogroups_2024-Update
Potri.005G207700 No alias auxin response factor 8 0.03 Orthogroups_2024-Update
Seita.3G321500.1 No alias ARF-type transcription factor 0.04 Orthogroups_2024-Update
Seita.6G212000.1 No alias ARF-type transcription factor & auxin signal mediator... 0.04 Orthogroups_2024-Update
Solyc11g069500 No alias Auxin Response Factor 10A 0.02 Orthogroups_2024-Update
Solyc12g042070 No alias Auxin Response Factor 2B 0.05 Orthogroups_2024-Update
Sopen12g021160 No alias Auxin response factor 0.03 Orthogroups_2024-Update
evm.model.tig00020904.93 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
CC GO:0005634 nucleus IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
BP GO:0009725 response to hormone IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0015078 proton transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
BP GO:0018142 protein-DNA covalent cross-linking IEP Predicted GO
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
BP GO:0030832 regulation of actin filament length IEP Predicted GO
BP GO:0030833 regulation of actin filament polymerization IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0032271 regulation of protein polymerization IEP Predicted GO
BP GO:0032535 regulation of cellular component size IEP Predicted GO
BP GO:0032956 regulation of actin cytoskeleton organization IEP Predicted GO
BP GO:0032970 regulation of actin filament-based process IEP Predicted GO
BP GO:0033043 regulation of organelle organization IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0043254 regulation of protein complex assembly IEP Predicted GO
BP GO:0044087 regulation of cellular component biogenesis IEP Predicted GO
CC GO:0044599 AP-5 adaptor complex IEP Predicted GO
BP GO:0051493 regulation of cytoskeleton organization IEP Predicted GO
MF GO:0060090 molecular adaptor activity IEP Predicted GO
CC GO:0070449 elongin complex IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
BP GO:0090066 regulation of anatomical structure size IEP Predicted GO
BP GO:0110053 regulation of actin filament organization IEP Predicted GO
BP GO:1902903 regulation of supramolecular fiber organization IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR010525 Auxin_resp 260 343
IPR003340 B3_DNA-bd 134 235
IPR033389 AUX/IAA_dom 972 1061
No external refs found!