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  5. Sobic.008G016100.1

Sobic.008G016100.1


Description : substrate adaptor *(HTD1/DWD1) of CUL4-based E3 ubiquitin ligase complex


Gene families : OG_42_0002836 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002836_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G016100.1
Cluster HCAA Clusters: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Bradi4g26390 No alias Transducin family protein / WD-40 repeat family protein 0.04 Orthogroups_2024-Update
Brara.I04730.1 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.05 Orthogroups_2024-Update
Seita.7G311500.1 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.03 Orthogroups_2024-Update
Solyc07g039200 No alias WD-repeat protein, putative (AHRD V3.3 *** B9SP08_RICCO) 0.03 Orthogroups_2024-Update
Sopen07g017550 No alias WD domain, G-beta repeat 0.04 Orthogroups_2024-Update
evm.model.contig_3542.9 No alias (at2g19540 : 247.0) Transducin family protein / WD-40... 0.03 Orthogroups_2024-Update
evm.model.tig00001493.9 No alias (at2g19540 : 125.0) Transducin family protein / WD-40... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005778 peroxisomal membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
CC GO:0031903 microbody membrane IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 269 302
IPR001680 WD40_repeat 355 392
IPR022052 Histone-bd_RBBP4_N 49 115
No external refs found!