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  5. Sobic.008G016300.1

Sobic.008G016300.1


Description : FRS/FRF-type transcription factor


Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G016300.1
Cluster HCAA Clusters: Cluster_405

Target Alias Description ECC score Gene Family Method Actions
At1g52520 No alias Protein FAR1-RELATED SEQUENCE 6... 0.03 Orthogroups_2024-Update
Bradi4g23625 No alias FAR1-related sequence 5 0.01 Orthogroups_2024-Update
Brara.A02741.1 No alias transcriptional regulator of red/far-red light... 0.01 Orthogroups_2024-Update
Brara.B03519.1 No alias FRS/FRF-type transcription factor 0.01 Orthogroups_2024-Update
GRMZM2G155980 No alias FAR1-related sequence 6 0.02 Orthogroups_2024-Update
Glyma.01G000400 No alias FAR1-related sequence 9 0.03 Orthogroups_2024-Update
Glyma.13G341600 No alias FAR1-related sequence 4 0.08 Orthogroups_2024-Update
HORVU3Hr1G022720.2 No alias FRS/FRF-type transcription factor 0.03 Orthogroups_2024-Update
HORVU3Hr1G022760.2 No alias FRS/FRF-type transcription factor 0.03 Orthogroups_2024-Update
HORVU5Hr1G044340.2 No alias FRS/FRF-type transcription factor 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007527 Znf_SWIM 548 575
IPR018289 MULE_transposase_dom 263 355
IPR004330 FAR1_DNA_bnd_dom 77 166
No external refs found!