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  5. Sobic.008G033900.2

Sobic.008G033900.2


Description : component *(DDP) of ISWI chromatin remodeling complex & PHD finger transcription factor


Gene families : OG_42_0001571 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001571_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G033900.2
Cluster HCAA Clusters: Cluster_165

Target Alias Description ECC score Gene Family Method Actions
Bradi4g42780 No alias PHD finger family protein 0.04 Orthogroups_2024-Update
HORVU2Hr1G022310.4 No alias PHD finger transcription factor & component *(DDP) of... 0.03 Orthogroups_2024-Update
HORVU4Hr1G025620.28 No alias PHD finger transcription factor & component *(DDP) of... 0.04 Orthogroups_2024-Update
Sobic.002G405800.1 No alias component *(DDP) of ISWI chromatin remodeling complex &... 0.03 Orthogroups_2024-Update
Sopen11g024880 No alias DDT domain 0.02 Orthogroups_2024-Update
evm.model.tig00000113.28 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0035673 oligopeptide transmembrane transporter activity IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0042887 amide transmembrane transporter activity IEP Predicted GO
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
MF GO:1904680 peptide transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 473 515
IPR018501 DDT_dom 257 313
No external refs found!