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  5. Sobic.008G040000.1

Sobic.008G040000.1


Description : Unknown function


Gene families : OG_42_0001457 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001457_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G040000.1
Cluster HCAA Clusters: Cluster_234

Target Alias Description ECC score Gene Family Method Actions
Solyc07g047820 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006810 transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 895 920
IPR002885 Pentatricopeptide_repeat 427 455
IPR002885 Pentatricopeptide_repeat 824 869
IPR002885 Pentatricopeptide_repeat 319 367
IPR002885 Pentatricopeptide_repeat 528 577
IPR002885 Pentatricopeptide_repeat 598 644
IPR002885 Pentatricopeptide_repeat 735 782
IPR002885 Pentatricopeptide_repeat 666 714
IPR002885 Pentatricopeptide_repeat 458 505
IPR002885 Pentatricopeptide_repeat 215 262
IPR002885 Pentatricopeptide_repeat 176 204
IPR002885 Pentatricopeptide_repeat 280 312
IPR002885 Pentatricopeptide_repeat 384 416
No external refs found!