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  5. Sobic.008G047400.2

Sobic.008G047400.2


Description : TUB-type transcription factor


Gene families : OG_42_0000271 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000271_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G047400.2
Cluster HCAA Clusters: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
230435 No alias tubby like protein 1 0.02 Orthogroups_2024-Update
91333 No alias tubby like protein 10 0.03 Orthogroups_2024-Update
At2g18280 No alias Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:B9DGB6] 0.02 Orthogroups_2024-Update
At5g18680 No alias Uncharacterized protein At5g18680 (Fragment)... 0.03 Orthogroups_2024-Update
Bradi4g41820 No alias tubby like protein 1 0.03 Orthogroups_2024-Update
Brara.G00196.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Cre12.g520650 No alias tubby like protein 1 0.02 Orthogroups_2024-Update
GRMZM2G176340 No alias tubby like protein 2 0.03 Orthogroups_2024-Update
Potri.005G228500 No alias tubby like protein 6 0.02 Orthogroups_2024-Update
Seita.9G404200.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Sopen01g029620 No alias Tub family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Predicted GO
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0035673 oligopeptide transmembrane transporter activity IEP Predicted GO
MF GO:0042887 amide transmembrane transporter activity IEP Predicted GO
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
MF GO:0098809 nitrite reductase activity IEP Predicted GO
MF GO:1904680 peptide transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001810 F-box_dom 53 101
IPR000007 Tubby_C 114 432
No external refs found!