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  5. Sobic.008G047800.1

Sobic.008G047800.1


Description : substrate adaptor of CUL4-based E3 ubiquitin ligase complex


Gene families : OG_42_0002867 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002867_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G047800.1
Cluster HCAA Clusters: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
Bradi4g41777 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Orthogroups_2024-Update
Kfl00368_0110 kfl00368_0110_v1.1 (at3g05090 : 647.0) Encodes a DCAF protein. Mutants are... 0.03 Orthogroups_2024-Update
MA_555156g0010 No alias (at3g05090 : 356.0) Encodes a DCAF protein. Mutants are... 0.04 Orthogroups_2024-Update
Seita.7G293100.1 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase complex 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
BP GO:0016556 mRNA modification IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043484 regulation of RNA splicing IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0050684 regulation of mRNA processing IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0080009 mRNA methylation IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
BP GO:1903311 regulation of mRNA metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR021772 DUF3337 608 754
IPR001680 WD40_repeat 294 329
IPR001680 WD40_repeat 216 247
IPR001680 WD40_repeat 121 160
IPR001680 WD40_repeat 34 67
IPR001680 WD40_repeat 254 289
No external refs found!