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  5. Sobic.008G066100.1

Sobic.008G066100.1


Description : endoribonuclease *(CSP41)


Gene families : OG_42_0003865 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003865_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G066100.1
Cluster HCAA Clusters: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Brara.I05274.1 No alias endoribonuclease *(CSP41) 0.02 Orthogroups_2024-Update
Cre10.g435800 No alias chloroplast RNA binding 0.02 Orthogroups_2024-Update
Glyma.19G227700 No alias chloroplast RNA binding 0.04 Orthogroups_2024-Update
HORVU2Hr1G036220.1 No alias endoribonuclease *(CSP41) 0.03 Orthogroups_2024-Update
Kfl00044_0410 kfl00044_0410_v1.1 (at1g09340 : 487.0) Encodes CHLOROPLAST RNA BINDING... 0.03 Orthogroups_2024-Update
LOC_Os12g23180 No alias 3-beta hydroxysteroid dehydrogenase/isomerase family... 0.03 Orthogroups_2024-Update
MA_196108g0010 No alias (at1g09340 : 139.0) Encodes CHLOROPLAST RNA BINDING... 0.03 Orthogroups_2024-Update
Mp1g11680.1 No alias endoribonuclease (CSP41) 0.02 Orthogroups_2024-Update
Potri.013G006100 No alias chloroplast RNA binding 0.03 Orthogroups_2024-Update
Pp1s71_283V6 No alias nad-dependent epimerase dehydratase 0.03 Orthogroups_2024-Update
Seita.3G304400.1 No alias endoribonuclease *(CSP41) 0.09 Orthogroups_2024-Update
Solyc06g073260 No alias chloroplast RNA binding protein (AHRD V3.3 *** AT1G09340.1) 0.03 Orthogroups_2024-Update
Sopen06g029620 No alias NAD dependent epimerase/dehydratase family 0.04 Orthogroups_2024-Update
evm.model.contig_3495.2 No alias (at1g09340 : 335.0) Encodes CHLOROPLAST RNA BINDING... 0.02 Orthogroups_2024-Update
evm.model.tig00021181.14 No alias (at1g09340 : 348.0) Encodes CHLOROPLAST RNA BINDING... 0.03 Orthogroups_2024-Update
evm.model.tig00021720.14 No alias (at1g09340 : 242.0) Encodes CHLOROPLAST RNA BINDING... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005886 plasma membrane IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0071586 CAAX-box protein processing IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001509 Epimerase_deHydtase 58 275
No external refs found!