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  5. Sobic.008G085300.1

Sobic.008G085300.1


Description : methylcytosine-specific DNA glycosylase *(ROS1) & bifunctional DNA glycosylase/lyase *(ROS1)


Gene families : OG_42_0001291 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001291_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G085300.1
Cluster HCAA Clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
At2g36490 No alias Protein ROS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJQ6] 0.03 Orthogroups_2024-Update
Bradi4g08870 No alias HhH-GPD base excision DNA repair family protein 0.05 Orthogroups_2024-Update
Glyma.03G190800 No alias HhH-GPD base excision DNA repair family protein 0.04 Orthogroups_2024-Update
Glyma.10G202150 No alias HhH-GPD base excision DNA repair family protein 0.03 Orthogroups_2024-Update
Kfl00179_0260 kfl00179_0260_v1.1 (at3g10010 : 280.0) Encodes a protein with DNA... 0.03 Orthogroups_2024-Update
Pp1s226_20V6 No alias dna glycosylase 0.04 Orthogroups_2024-Update
Seita.2G152900.1 No alias methylcytosine-specific DNA glycosylase *(ROS1) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006476 protein deacetylation IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016151 nickel cation binding IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016575 histone deacetylation IEP Predicted GO
CC GO:0016593 Cdc73/Paf1 complex IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
BP GO:0019627 urea metabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
CC GO:0035145 exon-exon junction complex IEP Predicted GO
CC GO:0035550 urease complex IEP Predicted GO
BP GO:0035601 protein deacylation IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0043419 urea catabolic process IEP Predicted GO
BP GO:0043605 cellular amide catabolic process IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0071941 nitrogen cycle metabolic process IEP Predicted GO
BP GO:0098732 macromolecule deacylation IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR028924 Perm-CXXC 1726 1756
IPR028925 RRM_DME 1760 1860
No external refs found!