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  5. Sobic.008G092600.1

Sobic.008G092600.1


Description : E3 ubiquitin ligase *(UPL1)


Gene families : OG_42_0001888 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001888_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G092600.1
Cluster HCAA Clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
154179 No alias ubiquitin-protein ligase 1 0.06 Orthogroups_2024-Update
At1g70320 No alias E3 ubiquitin-protein ligase UPL2... 0.07 Orthogroups_2024-Update
Bradi4g07997 No alias ubiquitin-protein ligase 1 0.12 Orthogroups_2024-Update
Cre01.g012450 No alias ubiquitin-protein ligase 1 0.02 Orthogroups_2024-Update
GRMZM2G331368 No alias ubiquitin-protein ligase 1 0.04 Orthogroups_2024-Update
GRMZM2G411536 No alias ubiquitin-protein ligase 2 0.04 Orthogroups_2024-Update
Glyma.02G216000 No alias ubiquitin-protein ligase 1 0.05 Orthogroups_2024-Update
Glyma.04G096900 No alias ubiquitin-protein ligase 1 0.06 Orthogroups_2024-Update
Glyma.05G133100 No alias ubiquitin-protein ligase 1 0.07 Orthogroups_2024-Update
Glyma.06G098700 No alias ubiquitin-protein ligase 1 0.08 Orthogroups_2024-Update
Glyma.08G087600 No alias ubiquitin-protein ligase 1 0.07 Orthogroups_2024-Update
Glyma.14G183000 No alias ubiquitin-protein ligase 2 0.09 Orthogroups_2024-Update
HORVU5Hr1G033930.8 No alias E3 ubiquitin ligase *(UPL1) 0.02 Orthogroups_2024-Update
Kfl00780_0030 kfl00780_0030_v1.1 (at1g55860 : 726.0) encodes a ubiquitin-protein ligase... 0.04 Orthogroups_2024-Update
LOC_Os09g07900 No alias ubiquitin-protein ligase 1, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g24080 No alias HECT-domain domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_20049g0010 No alias (at1g55860 : 1461.0) encodes a ubiquitin-protein ligase... 0.07 Orthogroups_2024-Update
MA_7295g0020 No alias (at1g70320 : 866.0) encodes a ubiquitin-protein... 0.05 Orthogroups_2024-Update
Mp4g21620.1 No alias monomeric E3 ubiquitin ligase (HECT) 0.04 Orthogroups_2024-Update
PSME_00024428-RA No alias (at1g55860 : 1240.0) encodes a ubiquitin-protein ligase... 0.04 Orthogroups_2024-Update
Pp1s138_130V6 No alias e3 ubiquitin protein ligase 0.07 Orthogroups_2024-Update
Pp1s268_65V6 No alias probable ubiquitin ligase tom1p fragment 0.03 Orthogroups_2024-Update
Pp1s42_128V6 No alias e3 ubiquitin protein ligase 0.07 Orthogroups_2024-Update
Seita.2G152700.1 No alias E3 ubiquitin ligase *(UPL1) 0.08 Orthogroups_2024-Update
Seita.3G302600.1 No alias E3 ubiquitin ligase *(UPL1) 0.07 Orthogroups_2024-Update
evm.model.contig_2051.21 No alias (at1g55860 : 460.0) encodes a ubiquitin-protein ligase... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006476 protein deacetylation IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
MF GO:0016151 nickel cation binding IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
BP GO:0016575 histone deacetylation IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
BP GO:0019627 urea metabolic process IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
CC GO:0035550 urease complex IEP Predicted GO
BP GO:0035601 protein deacylation IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043419 urea catabolic process IEP Predicted GO
BP GO:0043605 cellular amide catabolic process IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0044270 cellular nitrogen compound catabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0071941 nitrogen cycle metabolic process IEP Predicted GO
BP GO:0098732 macromolecule deacylation IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR010314 E3_Ub_ligase_DUF913 479 804
IPR015940 UBA 1302 1339
IPR010309 E3_Ub_ligase_DUF908 252 416
IPR010309 E3_Ub_ligase_DUF908 113 257
IPR025527 DUF4414 2571 2596
IPR025527 DUF4414 2647 2678
IPR025527 DUF4414 2608 2637
IPR000569 HECT_dom 3337 3647
No external refs found!