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  5. Sobic.008G100300.1

Sobic.008G100300.1


Description : Unknown function


Gene families : OG_42_0001160 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001160_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G100300.1
Cluster HCAA Clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
53500 No alias pumilio 12 0.02 Orthogroups_2024-Update
A4A49_25869 No alias pumilio-like 12 0.03 Orthogroups_2024-Update
At1g35730 No alias pumilio 9 [Source:TAIR;Acc:AT1G35730] 0.03 Orthogroups_2024-Update
Bradi4g07100 No alias pumilio 7 0.05 Orthogroups_2024-Update
GRMZM2G006287 No alias pumilio 7 0.03 Orthogroups_2024-Update
Glyma.04G102900 No alias pumilio 7 0.04 Orthogroups_2024-Update
Glyma.06G104100 No alias pumilio 7 0.03 Orthogroups_2024-Update
HORVU5Hr1G038840.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os12g31000 No alias pumilio-family RNA binding repeat domain containing... 0.03 Orthogroups_2024-Update
Mp1g09040.1 No alias Pumilio homolog 12 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
PSME_00014496-RA No alias (at5g56510 : 196.0) Encodes a member of the Arabidopsis... 0.03 Orthogroups_2024-Update
Potri.002G095400 No alias pumilio 7 0.02 Orthogroups_2024-Update
Pp1s14_277V6 No alias MCD7.1; pumilio-family RNA-binding protein, putative... 0.02 Orthogroups_2024-Update
Seita.3G360900.1 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000723 telomere maintenance IEP Predicted GO
MF GO:0004371 glycerone kinase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
BP GO:0006066 alcohol metabolic process IEP Predicted GO
BP GO:0006071 glycerol metabolic process IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009092 homoserine metabolic process IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0019346 transsulfuration IEP Predicted GO
BP GO:0019400 alditol metabolic process IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
BP GO:0032200 telomere organization IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
BP GO:0050667 homocysteine metabolic process IEP Predicted GO
BP GO:0060249 anatomical structure homeostasis IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 251 270
IPR001313 Pumilio_RNA-bd_rpt 434 450
IPR001313 Pumilio_RNA-bd_rpt 469 501
IPR001313 Pumilio_RNA-bd_rpt 324 356
IPR001313 Pumilio_RNA-bd_rpt 395 428
IPR001313 Pumilio_RNA-bd_rpt 360 390
IPR001313 Pumilio_RNA-bd_rpt 283 313
No external refs found!