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  5. Sobic.008G103900.1

Sobic.008G103900.1


Description : RNA editing factor *(ORRM3)


Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G103900.1
Cluster HCAA Clusters: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
140819 No alias glycine-rich RNA-binding protein 4 0.04 Orthogroups_2024-Update
81392 No alias glycine-rich RNA-binding protein 3 0.05 Orthogroups_2024-Update
At3g23830 No alias GRP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD35] 0.03 Orthogroups_2024-Update
At5g61030 No alias GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5] 0.05 Orthogroups_2024-Update
Brara.B03236.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.C04224.1 No alias RNA editing factor *(ORRM3) 0.09 Orthogroups_2024-Update
Brara.E01401.1 No alias RNA editing factor *(ORRM3) 0.12 Orthogroups_2024-Update
Brara.H00482.1 No alias RNA editing factor *(ORRM3) 0.12 Orthogroups_2024-Update
Brara.I00645.1 No alias RNA editing factor *(ORRM3) 0.09 Orthogroups_2024-Update
Brara.K01454.1 No alias Unknown function 0.07 Orthogroups_2024-Update
GRMZM2G003897 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Orthogroups_2024-Update
GRMZM2G131167 No alias glycine-rich RNA-binding protein 3 0.06 Orthogroups_2024-Update
Glyma.18G266500 No alias glycine-rich RNA-binding protein 3 0.07 Orthogroups_2024-Update
HORVU3Hr1G094330.1 No alias RNA editing factor *(ORRM3) 0.04 Orthogroups_2024-Update
HORVU4Hr1G059000.3 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os10g17454 No alias RNA recognition motif containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g43600 No alias RNA recognition motif containing protein, expressed 0.03 Orthogroups_2024-Update
Mp1g21200.1 No alias RNA editing factor (ORRM) 0.02 Orthogroups_2024-Update
Mp2g24130.1 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Orthogroups_2024-Update
Mp6g08160.1 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Orthogroups_2024-Update
Potri.001G319800 No alias glycine-rich RNA-binding protein 2 0.05 Orthogroups_2024-Update
Potri.001G319900 No alias glycine-rich RNA-binding protein 2 0.07 Orthogroups_2024-Update
Potri.004G155300 No alias cold, circadian rhythm, and RNA binding 1 0.03 Orthogroups_2024-Update
Potri.009G116400 No alias cold, circadian rhythm, and RNA binding 1 0.03 Orthogroups_2024-Update
Potri.017G059000 No alias glycine-rich RNA-binding protein 2 0.06 Orthogroups_2024-Update
Pp1s118_101V6 No alias glycine-rich rna-binding 0.02 Orthogroups_2024-Update
Pp1s45_280V6 No alias glycine-rich rna-binding 0.02 Orthogroups_2024-Update
Seita.2G381300.1 No alias RNA editing factor *(ORRM3) 0.12 Orthogroups_2024-Update
Seita.3G357800.1 No alias RNA editing factor *(ORRM3) 0.16 Orthogroups_2024-Update
Seita.5G427300.1 No alias RNA editing factor *(ORRM3) 0.06 Orthogroups_2024-Update
Seita.9G021300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc02g088790 No alias RNA-binding protein (AHRD V3.3 *** Q941H9_TOBAC) 0.03 Orthogroups_2024-Update
Solyc05g053780 No alias RNA binding protein-like protein (AHRD V3.3 *** Q3HVL3_SOLTU) 0.06 Orthogroups_2024-Update
Solyc09g092320 No alias RNA binding protein (AHRD V3.3 *** O23793_NICSY) 0.05 Orthogroups_2024-Update
Solyc10g081180 No alias RNA-binding protein (AHRD V3.3 *-* Q941H9_TOBAC) 0.12 Orthogroups_2024-Update
Sopen05g032250 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.04 Orthogroups_2024-Update
Sopen09g035220 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.05 Orthogroups_2024-Update
Sopen10g031680 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006098 pentose-phosphate shunt IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044445 cytosolic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051156 glucose 6-phosphate metabolic process IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0090730 Las1 complex IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
CC GO:1902555 endoribonuclease complex IEP Predicted GO
CC GO:1902911 protein kinase complex IEP Predicted GO
CC GO:1905348 endonuclease complex IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 32 102
No external refs found!