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  5. Sobic.008G112800.1

Sobic.008G112800.1


Description : component *(PRPF6) of U5 snRNP complex


Gene families : OG_42_0003515 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003515_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G112800.1
Cluster HCAA Clusters: Cluster_229

Target Alias Description ECC score Gene Family Method Actions
HORVU1Hr1G044750.1 No alias component *(PRPF6) of U5 snRNP complex 0.03 Orthogroups_2024-Update
Kfl00486_0030 kfl00486_0030_v1.1 (at4g03430 : 1197.0) Encodes a nuclear protein similar... 0.02 Orthogroups_2024-Update
Seita.9G205300.1 No alias component *(PRPF6) of U5 snRNP complex 0.07 Orthogroups_2024-Update
evm.model.tig00000880.19 No alias (at4g03430 : 278.0) Encodes a nuclear protein similar to... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR010491 PRP1_N 35 203
No external refs found!