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  5. Sobic.008G115000.1

Sobic.008G115000.1


Description : PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone methylation complex


Gene families : OG_42_0001253 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001253_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G115000.1
Cluster HCAA Clusters: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
Brara.C01195.1 No alias PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.04 Orthogroups_2024-Update
Brara.F02486.1 No alias PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.02 Orthogroups_2024-Update
Brara.K00846.1 No alias PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.03 Orthogroups_2024-Update
GRMZM2G166162 No alias vernalization5/VIN3-like 0.03 Orthogroups_2024-Update
Glyma.14G182300 No alias vernalization5/VIN3-like 0.03 Orthogroups_2024-Update
Solyc04g076400 No alias Protein VERNALIZATION INSENSITIVE 3 (AHRD V3.3 *** W9SPV3_9ROSA) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016409 palmitoyltransferase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003961 FN3_dom 341 420
IPR032881 Oberon_PHD 142 256
No external refs found!