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  5. Sobic.008G140600.1

Sobic.008G140600.1


Description : Unknown function


Gene families : OG_42_0001117 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001117_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G140600.1
Cluster HCAA Clusters: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
PSME_00008406-RA No alias (at5g15510 : 162.0) TPX2 (targeting protein for Xklp2)... 0.01 Orthogroups_2024-Update
PSME_00019247-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Potri.017G092100 No alias TPX2 (targeting protein for Xklp2) protein family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
InterPro domains Description Start Stop
IPR027329 TPX2_C 374 446
No external refs found!