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  5. Sobic.008G145300.3

Sobic.008G145300.3


Description : substrate adaptor *(NPY) of CUL3-BTB E3 ubiquitin ligase complex


Gene families : OG_42_0000067 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G145300.3
Cluster HCAA Clusters: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
231529 No alias Phototropic-responsive NPH3 family protein 0.04 Orthogroups_2024-Update
At1g03010 No alias BTB/POZ domain-containing protein At1g03010... 0.04 Orthogroups_2024-Update
At2g23050 No alias BTB/POZ domain-containing protein NPY4... 0.04 Orthogroups_2024-Update
Bradi3g46480 No alias Phototropic-responsive NPH3 family protein 0.05 Orthogroups_2024-Update
Bradi4g25900 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Brara.F02310.1 No alias substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquitin ligase complex 0.04 Orthogroups_2024-Update
Brara.I02813.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G025880 No alias Phototropic-responsive NPH3 family protein 0.04 Orthogroups_2024-Update
Glyma.03G080600 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Glyma.03G210700 No alias Phototropic-responsive NPH3 family protein 0.02 Orthogroups_2024-Update
Glyma.05G104000 No alias Phototropic-responsive NPH3 family protein 0.04 Orthogroups_2024-Update
Glyma.10G053700 No alias Phototropic-responsive NPH3 family protein 0.04 Orthogroups_2024-Update
HORVU6Hr1G053490.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Potri.001G357100 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Potri.005G130700 No alias Phototropic-responsive NPH3 family protein 0.02 Orthogroups_2024-Update
Sobic.001G077200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G204300.1 No alias substrate adaptor *(NPY) of CUL3-BTB E3 ubiquitin ligase complex 0.04 Orthogroups_2024-Update
Sobic.003G317000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.005G015200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.006G120000.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0032787 monocarboxylic acid metabolic process IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
MF GO:0070037 rRNA (pseudouridine) methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR027356 NPH3_dom 215 472
IPR000210 BTB/POZ_dom 28 115
No external refs found!