1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.008G152600.1

Sobic.008G152600.1


Description : ubiquitin-dependent protease *(DA1)


Gene families : OG_42_0000650 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000650_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G152600.1
Cluster HCAA Clusters: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
Bradi4g42580 No alias LIM domain-containing protein 0.03 Orthogroups_2024-Update
Cre10.g424350 No alias DA1 0.02 Orthogroups_2024-Update
GRMZM2G017845 No alias DA1 0.03 Orthogroups_2024-Update
GRMZM2G342105 No alias LIM domain-containing protein 0.03 Orthogroups_2024-Update
Kfl00898_0030 kfl00898_0030_v1.... (at4g36860 : 358.0) LIM domain-containing protein;... 0.02 Orthogroups_2024-Update
LOC_Os06g08400 No alias LIM domain-containing protein, putative, expressed 0.03 Orthogroups_2024-Update
Pp1s38_127V6 No alias zinc ion binding 0.02 Orthogroups_2024-Update
Seita.9G164800.1 No alias ubiquitin-dependent protease *(DA1) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0045048 protein insertion into ER membrane IEP Predicted GO
BP GO:0051205 protein insertion into membrane IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR003903 UIM_dom 76 89
IPR003903 UIM_dom 41 57
IPR001781 Znf_LIM 141 195
IPR022087 DA1-like 290 502
No external refs found!