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  5. Sobic.008G153000.1

Sobic.008G153000.1


Description : endomembrane trafficking ATG6-stability regulator protein *(TRAF1)


Gene families : OG_42_0002099 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002099_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G153000.1
Cluster HCAA Clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
A4A49_13426 No alias math domain-containing protein 0.03 Orthogroups_2024-Update
At5g43560 No alias TNF receptor-associated factor homolog 1a... 0.04 Orthogroups_2024-Update
Bradi2g20415 No alias TRAF-like superfamily protein 0.07 Orthogroups_2024-Update
Bradi2g51517 No alias TRAF-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi4g02725 No alias TRAF-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.10G008700 No alias TRAF-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.20G086700 No alias TRAF-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.20G202100 No alias TRAF-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.010G075000 No alias TRAF-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.3G185200.1 No alias endomembrane trafficking ATG6-stability regulator... 0.05 Orthogroups_2024-Update
Seita.3G375900.1 No alias endomembrane trafficking ATG6-stability regulator... 0.05 Orthogroups_2024-Update
Seita.5G337300.1 No alias endomembrane trafficking ATG6-stability regulator... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
MF GO:0060090 molecular adaptor activity IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 76 193
No external refs found!