1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.008G172200.1

Sobic.008G172200.1


Description : TCP-type transcription factor


Gene families : OG_42_0000203 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000203_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G172200.1
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
At3g02150 No alias Transcription factor TCP13... 0.03 Orthogroups_2024-Update
Bradi4g01547 No alias TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 0.06 Orthogroups_2024-Update
Brara.A00952.1 No alias TCP-type transcription factor 0.02 Orthogroups_2024-Update
Brara.G02694.1 No alias TCP-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.13G271700 No alias TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 0.03 Orthogroups_2024-Update
Glyma.19G030900 No alias plastid transcription factor 1 0.03 Orthogroups_2024-Update
LOC_Os05g43760 No alias TCP family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g05720 No alias TCP family transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g42190 No alias transposon protein, putative, unclassified, expressed 0.04 Orthogroups_2024-Update
MA_4774g0010 No alias (at3g02150 : 116.0) a chloroplast trans-acting factor of... 0.02 Orthogroups_2024-Update
Potri.015G050500 No alias TCP family transcription factor 0.03 Orthogroups_2024-Update
Seita.5G327600.1 No alias TCP-type transcription factor 0.03 Orthogroups_2024-Update
Solyc05g009900 No alias TCP transcription factor 25 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0006144 purine nucleobase metabolic process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
BP GO:0009113 purine nucleobase biosynthetic process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 45 152
No external refs found!