Sobic.008G179800.1

Description : transcription factor *(A/B-GATA)

Gene families : OG_42_0000071 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.008G179800.1
Cluster	HCAA Clusters: Cluster_189

Target	Alias	Description	ECC score	Gene Family Method
A4A49_15701	No alias	gata transcription factor 1	0.03	Orthogroups_2024-Update
At2g45050	No alias	GATA transcription factor 2...	0.04	Orthogroups_2024-Update
Brara.A00355.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
Brara.A02105.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
Brara.G01891.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
GRMZM2G379005	No alias	GATA transcription factor 12	0.02	Orthogroups_2024-Update
Glyma.02G073900	No alias	GATA transcription factor 4	0.03	Orthogroups_2024-Update
Glyma.03G232900	No alias	GATA transcription factor 16	0.04	Orthogroups_2024-Update
Glyma.08G187300	No alias	GATA transcription factor 29	0.04	Orthogroups_2024-Update
Glyma.14G094800	No alias	cytokinin-responsive gata factor 1	0.04	Orthogroups_2024-Update
LOC_Os12g07120	No alias	GATA zinc finger domain containing protein, expressed	0.02	Orthogroups_2024-Update
PSME_00001982-RA	No alias	(at5g25830 : 153.0) Encodes a member of the GATA factor...	0.03	Orthogroups_2024-Update
Potri.001G188500	No alias	GATA transcription factor 9	0.03	Orthogroups_2024-Update
Potri.005G066100	No alias	GATA transcription factor 12	0.02	Orthogroups_2024-Update
Potri.014G124400	No alias	GATA transcription factor 16	0.04	Orthogroups_2024-Update
Potri.019G033000	No alias	GATA transcription factor 9	0.03	Orthogroups_2024-Update
Potri.T172039	No alias	GATA transcription factor 12	0.02	Orthogroups_2024-Update
Seita.1G358400.1	No alias	transcription factor *(A/B-GATA)	0.04	Orthogroups_2024-Update
Seita.3G175200.1	No alias	transcription factor *(A/B-GATA)	0.04	Orthogroups_2024-Update
Seita.9G325200.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
Solyc01g110310	No alias	GATA transcription factor (AHRD V3.3 *** K4B3P4_SOLLC)	0.02	Orthogroups_2024-Update
Sopen05g032880	No alias	GATA zinc finger	0.03	Orthogroups_2024-Update
Sopen05g034530	No alias	GATA zinc finger	0.04	Orthogroups_2024-Update
Sopen09g034220	No alias	GATA zinc finger	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Predicted GO
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
BP	GO:0006952	defense response	IEP	Predicted GO
MF	GO:0008374	O-acyltransferase activity	IEP	Predicted GO
CC	GO:0032993	protein-DNA complex	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
BP	GO:0040008	regulation of growth	IEP	Predicted GO
CC	GO:0044427	chromosomal part	IEP	Predicted GO
CC	GO:0044815	DNA packaging complex	IEP	Predicted GO
BP	GO:0045927	positive regulation of growth	IEP	Predicted GO
BP	GO:0048518	positive regulation of biological process	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO
MF	GO:0140110	transcription regulator activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	233	267
IPR000679	Znf_GATA	149	179

External Links

No external refs found!

Sobic.008G179800.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation