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  5. Sobic.008G191600.1

Sobic.008G191600.1


Description : R-type component *(VAMP721/VAMP722) of SNARE cell-plate vesicle fusion complex & R-type VAMP7-group component of SNARE longin membrane fusion complex


Gene families : OG_42_0000264 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.008G191600.1
Cluster HCAA Clusters: Cluster_228

Target Alias Description ECC score Gene Family Method Actions
At2g25340 No alias VAMP712 [Source:UniProtKB/TrEMBL;Acc:A0A178VTB3] 0.03 Orthogroups_2024-Update
Bradi2g49168 No alias Function unknown 0.03 Orthogroups_2024-Update
Glyma.10G123500 No alias vesicle-associated membrane protein 726 0.02 Orthogroups_2024-Update
Glyma.17G111000 No alias vesicle-associated membrane protein 713 0.03 Orthogroups_2024-Update
LOC_Os03g58840 No alias vesicle-associated membrane protein, putative, expressed 0.03 Orthogroups_2024-Update
Mp7g07410.1 No alias VAMP7-type R-type SNARE longin protein 0.02 Orthogroups_2024-Update
PSME_00032543-RA No alias (at5g22360 : 201.0) Member of Synaptobrevin-like... 0.02 Orthogroups_2024-Update
Potri.010G239900 No alias vesicle-associated membrane protein 727 0.03 Orthogroups_2024-Update
Potri.015G118300 No alias vesicle-associated membrane protein 726 0.03 Orthogroups_2024-Update
Sobic.001G493600.1 No alias R-type component *(VAMP721/VAMP722) of SNARE cell-plate... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR010908 Longin_dom 41 116
No external refs found!