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  5. Sobic.009G001500.1

Sobic.009G001500.1


Description : component *(PnsL5) of NDH lumen subcomplex L & peptidyl-prolyl cis-trans isomerase & EC_5.2 cis-trans-isomerase


Gene families : OG_42_0000307 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000307_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G001500.1
Cluster HCAA Clusters: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
At3g62030 No alias Rotamase CYP 4 [Source:UniProtKB/TrEMBL;Acc:F4IX26] 0.05 Orthogroups_2024-Update
Bradi2g11060 No alias rotamase CYP 4 0.04 Orthogroups_2024-Update
Bradi2g39950 No alias cyclophilin 20-2 0.1 Orthogroups_2024-Update
Brara.C00549.1 No alias component *(PnsL5) of NDH lumen subcomplex L &... 0.04 Orthogroups_2024-Update
Brara.I03851.1 No alias peptidyl-prolyl cis-trans isomerase *(ROC1/2/3) & EC_5.2... 0.03 Orthogroups_2024-Update
Brara.I04288.1 No alias peptidyl-prolyl cis-trans isomerase & EC_5.2 cis-trans-isomerase 0.03 Orthogroups_2024-Update
Cre13.g588100 No alias rotamase cyclophilin 2 0.03 Orthogroups_2024-Update
GRMZM2G063244 No alias rotamase CYP 4 0.04 Orthogroups_2024-Update
GRMZM2G087570 No alias cyclophilin 20-2 0.03 Orthogroups_2024-Update
GRMZM2G326111 No alias Cyclophilin-like peptidyl-prolyl cis-trans isomerase... 0.03 Orthogroups_2024-Update
HORVU4Hr1G000910.3 No alias peptidyl-prolyl cis-trans isomerase *(ROC1/2/3) & EC_5.2... 0.03 Orthogroups_2024-Update
Kfl00071_0230 kfl00071_0230_v1.1 (q39613|cyph_catro : 197.0) Peptidyl-prolyl cis-trans... 0.03 Orthogroups_2024-Update
Kfl00289_0160 kfl00289_0160_v1.1 (q41651|cypb_vicfa : 197.0) Peptidyl-prolyl cis-trans... 0.03 Orthogroups_2024-Update
LOC_Os05g01270 No alias peptidyl-prolyl cis-trans isomerase, putative, expressed 0.02 Orthogroups_2024-Update
Potri.001G060200 No alias cyclophilin 20-2 0.05 Orthogroups_2024-Update
Potri.002G185200 No alias rotamase CYP 4 0.04 Orthogroups_2024-Update
Potri.003G167700 No alias cyclophilin 20-2 0.03 Orthogroups_2024-Update
Pp1s196_68V6 No alias peptidyl-prolyl cis-trans isomerase 0.03 Orthogroups_2024-Update
Seita.5G034900.1 No alias peptidyl-prolyl cis-trans isomerase & EC_5.2 cis-trans-isomerase 0.09 Orthogroups_2024-Update
Solyc01g009990 No alias Peptidyl-prolyl cis-trans isomerase (AHRD V3.3 *** K4ATJ4_SOLLC) 0.03 Orthogroups_2024-Update
Sopen01g005550 No alias Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 0.03 Orthogroups_2024-Update
evm.model.contig_3395.3 No alias (at5g13120 : 202.0) Encodes a lumenal cyclophilin with... 0.02 Orthogroups_2024-Update
evm.model.tig00001636.9 No alias (at2g29960 : 249.0) encodes a cyclophilin protein that... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEA 16Dec
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003937 IMP cyclohydrolase activity IEP Predicted GO
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004109 coproporphyrinogen oxidase activity IEP Predicted GO
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Predicted GO
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Predicted GO
MF GO:0004655 porphobilinogen synthase activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004832 valine-tRNA ligase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006163 purine nucleotide metabolic process IEP Predicted GO
BP GO:0006164 purine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006438 valyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
BP GO:0009165 nucleotide biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0051920 peroxiredoxin activity IEP Predicted GO
BP GO:0072521 purine-containing compound metabolic process IEP Predicted GO
BP GO:0072522 purine-containing compound biosynthetic process IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002130 Cyclophilin-type_PPIase_dom 98 244
No external refs found!