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  5. Sobic.009G013700.1

Sobic.009G013700.1


Description : pectin acetylesterase *(PAE)


Gene families : OG_42_0000252 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G013700.1
Cluster HCAA Clusters: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
82014 No alias Pectinacetylesterase family protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G116360.7 No alias pectin acetylesterase *(PAE) 0.1 Orthogroups_2024-Update
HORVU3Hr1G116490.1 No alias pectin acetylesterase *(PAE) 0.04 Orthogroups_2024-Update
Potri.005G001500 No alias Pectinacetylesterase family protein 0.03 Orthogroups_2024-Update
Potri.006G084900 No alias Pectinacetylesterase family protein 0.03 Orthogroups_2024-Update
Pp1s136_39V6 No alias pectinacetylesterase protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016787 hydrolase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
CC GO:0070939 Dsl1/NZR complex IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004963 PAE/NOTUM 62 409
No external refs found!