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  5. Sobic.009G040600.1

Sobic.009G040600.1


Description : SMARCA component *(SYD/BRM/MINU)


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G040600.1
Cluster HCAA Clusters: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
A4A49_03849 No alias protein chromatin remodeling 4 0.03 Orthogroups_2024-Update
A4A49_30694 No alias protein chromatin remodeling 5 0.02 Orthogroups_2024-Update
Cre08.g377200 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
GRMZM2G049168 No alias SNF2 domain-containing protein / helicase... 0.02 Orthogroups_2024-Update
Glyma.17G022300 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Kfl00055_0090 kfl00055_0090_v1.... (q7g8y3|isw2_orysa : 1337.0) Probable chromatin... 0.02 Orthogroups_2024-Update
PSME_00000429-RA No alias (at2g28290 : 480.0) Encodes a SWI2/SNF2-like protein in... 0.02 Orthogroups_2024-Update
Pp1s65_183V6 No alias chromatin remodeling complex subunit 0.01 Orthogroups_2024-Update
Solyc12g099910 No alias chromatin remodeling 5 (AHRD V3.3 *** AT2G13370.3) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
MF GO:0042393 histone binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0015078 proton transmembrane transporter activity IEP Predicted GO
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0036442 proton-exporting ATPase activity IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP Predicted GO
InterPro domains Description Start Stop
IPR029295 SnAC 955 1013
IPR001650 Helicase_C 747 860
IPR000330 SNF2_N 443 728
No external refs found!