1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.009G042000.1

Sobic.009G042000.1


Description : homologous recombination repair factor *(MDC1)


Gene families : OG_42_0003070 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003070_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G042000.1
Cluster HCAA Clusters: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
Kfl00284_0020 kfl00284_0020_v1.1 (at3g21480 : 127.0) BRCT domain-containing DNA repair... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
CC GO:0030915 Smc5-Smc6 complex IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
BP GO:0052646 alditol phosphate metabolic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0072488 ammonium transmembrane transport IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0106068 SUMO ligase complex IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001357 BRCT_dom 963 1058
No external refs found!