Sobic.009G050600.1

Description : transcription factor *(A/B-GATA)

Gene families : OG_42_0000071 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.009G050600.1
Cluster	HCAA Clusters: Cluster_230

Target	Alias	Description	ECC score	Gene Family Method
A4A49_15701	No alias	gata transcription factor 1	0.03	Orthogroups_2024-Update
At5g26930	No alias	GATA transcription factor 23...	0.03	Orthogroups_2024-Update
Bradi1g78540	No alias	GATA transcription factor 2	0.02	Orthogroups_2024-Update
Bradi3g50160	No alias	GATA transcription factor 4	0.03	Orthogroups_2024-Update
Bradi4g41570	No alias	GATA transcription factor 9	0.02	Orthogroups_2024-Update
Brara.F00491.1	No alias	transcription factor *(A/B-GATA)	0.06	Orthogroups_2024-Update
Brara.G01368.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
Brara.G01891.1	No alias	transcription factor *(A/B-GATA)	0.02	Orthogroups_2024-Update
Brara.I00909.1	No alias	transcription factor *(A/B-GATA)	0.02	Orthogroups_2024-Update
Brara.I04178.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
Brara.K01308.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
Glyma.10G210500	No alias	GATA transcription factor 9	0.02	Orthogroups_2024-Update
Glyma.13G325100	No alias	GATA transcription factor 11	0.03	Orthogroups_2024-Update
MA_44185g0010	No alias	(at5g25830 : 135.0) Encodes a member of the GATA factor...	0.03	Orthogroups_2024-Update
Potri.008G038900	No alias	GATA transcription factor 9	0.03	Orthogroups_2024-Update
Pp1s167_128V6	No alias	gata transcription factor 19	0.03	Orthogroups_2024-Update
Solyc01g110310	No alias	GATA transcription factor (AHRD V3.3 *** K4B3P4_SOLLC)	0.02	Orthogroups_2024-Update
Solyc11g069510	No alias	GATA transcription factor (AHRD V3.3 *** V7C3K3_PHAVU)	0.03	Orthogroups_2024-Update
Sopen02g029260	No alias	GATA zinc finger	0.03	Orthogroups_2024-Update
Sopen09g034220	No alias	GATA zinc finger	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004525	ribonuclease III activity	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Predicted GO
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Predicted GO
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	28	62

External Links

No external refs found!

Sobic.009G050600.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation