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  5. Sobic.009G054200.1

Sobic.009G054200.1


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G054200.1
Cluster HCAA Clusters: Cluster_219

Target Alias Description ECC score Gene Family Method Actions
AC195864.3_FG017 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G074220.1 No alias RNA editing factor *(MEF21) 0.09 Orthogroups_2024-Update
HORVU4Hr1G009150.1 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os01g15530 No alias tetratricopeptide-like helical, putative, expressed 0.03 Orthogroups_2024-Update
Pp1s186_64V6 No alias hypothetical protein [Oryza sativa (japonica cultivar-group)] 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 364 388
IPR002885 Pentatricopeptide_repeat 153 180
IPR002885 Pentatricopeptide_repeat 183 233
IPR002885 Pentatricopeptide_repeat 289 336
IPR002885 Pentatricopeptide_repeat 33 81
IPR032867 DYW_dom 504 596
No external refs found!