Sobic.009G056500.1


Description : RING-H2-class CTL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000181 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000181_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G056500.1
Cluster HCAA Clusters: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
A4A49_09521 No alias e3 ubiquitin-protein ligase mbr2 0.02 Orthogroups_2024-Update
A4A49_24395 No alias e3 ubiquitin-protein ligase mbr2 0.02 Orthogroups_2024-Update
Glyma.06G234300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.12G158500 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
CC GO:0034357 photosynthetic membrane IEP Predicted GO
CC GO:0042651 thylakoid membrane IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 485 527
No external refs found!