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  5. Sobic.009G056600.1

Sobic.009G056600.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G056600.1
Cluster HCAA Clusters: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
172324 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
At1g72200 No alias RING-H2 finger protein ATL11... 0.04 Orthogroups_2024-Update
At2g47560 No alias RING-H2 finger protein ATL64... 0.03 Orthogroups_2024-Update
At4g15975 No alias RING/U-box superfamily protein [Source:TAIR;Acc:AT4G15975] 0.03 Orthogroups_2024-Update
At5g01880 No alias RING-H2 finger protein ATL74... 0.04 Orthogroups_2024-Update
At5g05280 No alias RING-H2 finger protein ATL73... 0.04 Orthogroups_2024-Update
Bradi2g26403 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g55990 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g56160 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Brara.A00916.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.A02910.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.B02267.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.B02994.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.C03025.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.D02285.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.H01760.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.I03307.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
GRMZM2G015409 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G050774 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G409372 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.03G203400 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G156500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G069980.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU5Hr1G079940.1 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU5Hr1G082830.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU6Hr1G022590.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU7Hr1G121010.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
LOC_Os02g52210 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g42610 No alias RING finger protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_114175g0010 No alias (at3g16720 : 124.0) RING-H2 protein induced after... 0.03 Orthogroups_2024-Update
MA_184439g0010 No alias (at5g17600 : 109.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
MA_189618g0010 No alias (at1g49230 : 127.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
MA_479316g0010 No alias (at3g16720 : 91.3) RING-H2 protein induced after... 0.02 Orthogroups_2024-Update
MA_611616g0010 No alias (at1g49230 : 125.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
MA_634100g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_6934973g0010 No alias (at5g01880 : 125.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
MA_81046g0010 No alias (at1g49230 : 127.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00003015-RA No alias (at3g05200 : 122.0) Encodes a putative RING-H2 zinc... 0.02 Orthogroups_2024-Update
PSME_00040633-RA No alias (q40682|ef1d2_orysa : 94.4) Elongation factor 1-delta 2... 0.02 Orthogroups_2024-Update
Potri.001G400600 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.002G006400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.007G057300 No alias RING-H2 finger A3A 0.02 Orthogroups_2024-Update
Pp1s257_3V6 No alias ac009177_16 ring-h2 zinc finger protein atl6 0.02 Orthogroups_2024-Update
Seita.1G279400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.2G087800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.3G272800.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Seita.4G172200.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.5G363700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G248200.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G279000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.005G036400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.006G193000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Solyc01g100100 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc06g051250 No alias LOW QUALITY:RING/U-box superfamily protein, putative... 0.02 Orthogroups_2024-Update
Sopen02g017550 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen06g017190 No alias Ring finger domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 125 168
No external refs found!