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  5. Sobic.009G060800.1

Sobic.009G060800.1


Description : regulatory protein *(LOTR) involved in Casparian strip formation


Gene families : OG_42_0000240 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000240_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G060800.1
Cluster HCAA Clusters: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
Glyma.01G027800 No alias Protein of Unknown Function (DUF239) 0.03 Orthogroups_2024-Update
Seita.9G045900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc04g050490 No alias carboxyl-terminal peptidase (DUF239) (AHRD V3.3 *** AT5G18460.1) 0.03 Orthogroups_2024-Update
Sopen05g001020 No alias Domain of unknown function (DUF239) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
MF GO:0051743 red chlorophyll catabolite reductase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR025521 Neprosin_propep 64 187
IPR004314 Neprosin 211 427
No external refs found!