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  5. Sobic.009G079400.1

Sobic.009G079400.1


Description : RNA editing factor *(ECD1)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G079400.1
Cluster HCAA Clusters: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
130453 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
442088 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
51483 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
79052 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
85415 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
98955 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
A4A49_07003 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
A4A49_39625 No alias pentatricopeptide repeat-containing protein, chloroplastic 0.03 Orthogroups_2024-Update
At1g56570 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
Bradi1g06766 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g38705 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g47170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g56040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g06450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Bradi2g15700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g51740 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Brara.A00474.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.A03196.1 No alias RNA editing factor *(CREF3) 0.02 Orthogroups_2024-Update
Brara.F01301.1 No alias RNA editing factor *(OTP970) 0.02 Orthogroups_2024-Update
Brara.F03861.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.H00716.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G161368 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G171994 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.08G117400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G283000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G190600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.16G049800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.17G165800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.18G275000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G288100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G141800 No alias mitochondrial RNAediting factor 1 0.02 Orthogroups_2024-Update
HORVU4Hr1G014730.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G124580.1 No alias Unknown function 0.01 Orthogroups_2024-Update
PSME_00014882-RA No alias (at4g13650 : 307.0) Pentatricopeptide repeat (PPR)... 0.01 Orthogroups_2024-Update
PSME_00045329-RA No alias (at3g03740 : 124.0) BTB-POZ and MATH domain 4 (BPM4);... 0.01 Orthogroups_2024-Update
PSME_00051747-RA No alias (at1g11290 : 641.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
Potri.005G060600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.007G146800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.010G086200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.018G152300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s169_110V6 No alias T12J13.14; pentatricopeptide (PPR) repeat-containing... 0.01 Orthogroups_2024-Update
Pp1s276_42V6 No alias F4I10.100; pentatricopeptide (PPR) repeat-containing... 0.03 Orthogroups_2024-Update
Seita.1G102000.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.1G191400.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.1G272500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.1G311600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.2G001800.1 No alias RNA editing factor *(ELI1) 0.06 Orthogroups_2024-Update
Seita.2G068700.1 No alias RNA editing factor *(CRR28) 0.05 Orthogroups_2024-Update
Seita.2G400300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.3G137300.1 No alias RNA editing factor *(ECB2/VAC1) 0.04 Orthogroups_2024-Update
Seita.4G100100.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.4G168200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.4G218400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G065900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G176900.1 No alias Unknown function 0.08 Orthogroups_2024-Update
Seita.5G357300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G360300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G385400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G460300.1 No alias RNA editing factor *(OTP72) 0.04 Orthogroups_2024-Update
Seita.5G468800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.6G213800.1 No alias RNA editing factor *(DOT4) 0.04 Orthogroups_2024-Update
Seita.7G131800.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.7G164600.1 No alias RNA editing factor *(MEF12) 0.05 Orthogroups_2024-Update
Seita.9G015400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G068200.1 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
Seita.9G151300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G213100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G355700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G020000.7 No alias Unknown function 0.01 Orthogroups_2024-Update
Solyc02g081900 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc05g006800 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc05g013200 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc11g008940 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen01g041280 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen05g018650 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen07g026910 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0000726 non-recombinational repair IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0004000 adenosine deaminase activity IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Predicted GO
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Predicted GO
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0004784 superoxide dismutase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004814 arginine-tRNA ligase activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006420 arginyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006788 heme oxidation IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046490 isopentenyl diphosphate metabolic process IEP Predicted GO
BP GO:0050992 dimethylallyl diphosphate biosynthetic process IEP Predicted GO
BP GO:0050993 dimethylallyl diphosphate metabolic process IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 737 830
IPR002885 Pentatricopeptide_repeat 195 215
IPR002885 Pentatricopeptide_repeat 119 149
IPR002885 Pentatricopeptide_repeat 88 111
IPR002885 Pentatricopeptide_repeat 597 621
IPR002885 Pentatricopeptide_repeat 220 266
IPR002885 Pentatricopeptide_repeat 324 373
IPR002885 Pentatricopeptide_repeat 522 569
No external refs found!