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  5. Sobic.009G102200.2

Sobic.009G102200.2


Description : MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G102200.2

Target Alias Description ECC score Gene Family Method Actions
Brara.C01460.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Brara.H01136.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Glyma.17G132700 No alias AGAMOUS-like 19 0.01 Orthogroups_2024-Update
LOC_Os02g36924 No alias OsMADS27 - MADS-box family gene with MIKCc type-box, expressed 0.01 Orthogroups_2024-Update
MA_17919g0010 No alias (q6eu39|mads6_orysa : 111.0) MADS-box transcription... 0.03 Orthogroups_2024-Update
MA_211156g0010 No alias (q40885|ag_pethy : 164.0) Floral homeotic protein... 0.01 Orthogroups_2024-Update
MA_35712g0010 No alias (at4g11880 : 102.0) AGL12, AGL14, and AGL17 are all... 0.01 Orthogroups_2024-Update
PSME_00017701-RA No alias (at4g16370 : 263.0) Encodes an oligopeptide transporter... 0.01 Orthogroups_2024-Update
PSME_00050982-RA No alias (at4g11880 : 108.0) AGL12, AGL14, and AGL17 are all... 0.02 Orthogroups_2024-Update
PSME_00053030-RA No alias (q6q9i1|mads7_orysa : 100.0) MADS-box transcription... 0.01 Orthogroups_2024-Update
Potri.009G084200 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Solyc01g106710 No alias Transcription factor, MADS-box (AHRD V3.3 *** A0A103YIH6_CYNCS) 0.01 Orthogroups_2024-Update
Solyc06g069430 No alias FRUITFULL-like MADS-box 1 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 22 65
No external refs found!