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  5. Sobic.009G110500.2

Sobic.009G110500.2


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G110500.2
Cluster HCAA Clusters: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
172324 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
A4A49_18116 No alias ring-h2 finger protein atl78 0.02 Orthogroups_2024-Update
A4A49_40065 No alias ring-h2 finger protein atl70 0.03 Orthogroups_2024-Update
At1g20823 No alias RING-H2 finger protein ATL80... 0.02 Orthogroups_2024-Update
At3g10910 No alias RING-H2 finger protein ATL72... 0.03 Orthogroups_2024-Update
At5g01880 No alias RING-H2 finger protein ATL74... 0.04 Orthogroups_2024-Update
Bradi3g60770 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Brara.I03307.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Glyma.01G017300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G140800 No alias carbon/nitrogen insensitive 1 0.03 Orthogroups_2024-Update
Glyma.15G056000 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.16G030900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G082030.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G009820.3 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
HORVU7Hr1G108590.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
LOC_Os01g61470 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g42390 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.04 Orthogroups_2024-Update
MA_3380g0010 No alias (at1g49230 : 140.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_479316g0010 No alias (at3g16720 : 91.3) RING-H2 protein induced after... 0.03 Orthogroups_2024-Update
MA_69343g0010 No alias (at1g49230 : 137.0) RING/U-box superfamily protein;... 0.05 Orthogroups_2024-Update
MA_6934973g0010 No alias (at5g01880 : 125.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_9515738g0010 No alias (at5g17600 : 145.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Potri.003G073300 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Potri.008G018900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.010G243200 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.010G243500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.019G130100 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Pp1s185_21V6 No alias zinc finger (c3hc4-type ring finger) family protein 0.02 Orthogroups_2024-Update
Pp1s71_162V6 No alias ring finger 0.02 Orthogroups_2024-Update
Seita.4G088200.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Seita.7G205000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.001G345400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G378600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.002G416300.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.003G147301.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G193000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.010G221100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g100100 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004097 catechol oxidase activity IEP Predicted GO
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
MF GO:0035673 oligopeptide transmembrane transporter activity IEP Predicted GO
MF GO:0042887 amide transmembrane transporter activity IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
MF GO:1904680 peptide transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 144 187
No external refs found!