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  5. Sobic.009G142000.1

Sobic.009G142000.1


Description : Unknown function


Gene families : OG_42_0000694 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000694_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G142000.1
Cluster HCAA Clusters: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
A4A49_21461 No alias zinc finger ccch domain-containing protein 44 0.02 Orthogroups_2024-Update
Bradi4g35977 No alias nucleic acid binding;zinc ion binding;DNA binding 0.03 Orthogroups_2024-Update
Brara.I00996.1 No alias protein factor (NERD) of non-canonical RdDM pathway 0.03 Orthogroups_2024-Update
GRMZM2G078379 No alias nucleic acid binding;zinc ion binding;DNA binding 0.04 Orthogroups_2024-Update
Glyma.16G208800 No alias SWIB/MDM2 domain;Plus-3;GYF 0.03 Orthogroups_2024-Update
HORVU5Hr1G081290.3 No alias protein factor (NERD) of non-canonical RdDM pathway 0.02 Orthogroups_2024-Update
LOC_Os01g66140 No alias plus-3 domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_116694g0010 No alias (at2g16485 : 270.0) nucleic acid binding;zinc ion... 0.04 Orthogroups_2024-Update
Mp4g08690.1 No alias protein factor (NERD) of non-canonical RdDM pathway 0.03 Orthogroups_2024-Update
Solyc11g062220 No alias Zinc finger CCCH domain-containing protein 44 (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005337 nucleoside transmembrane transporter activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0015858 nucleoside transport IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0031011 Ino80 complex IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
BP GO:1901642 nucleoside transmembrane transport IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003121 SWIB_MDM2_domain 282 354
IPR004343 Plus-3_dom 404 511
IPR003169 GYF 832 872
No external refs found!