Sobic.009G166500.1

Description : component *(uS12) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0001537 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001537_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.009G166500.1
Cluster	HCAA Clusters: Cluster_124

Target	Alias	Description	ECC score	Gene Family Method
145246	No alias	Ribosomal protein S12/S23 family protein	0.27	Orthogroups_2024-Update
A4A49_33378	No alias	40s ribosomal protein s23	0.05	Orthogroups_2024-Update
A4A49_59751	No alias	40s ribosomal protein s23	0.21	Orthogroups_2024-Update
At3g09680	No alias	40S ribosomal protein S23-1...	0.05	Orthogroups_2024-Update
Bradi2g22897	No alias	Ribosomal protein S12/S23 family protein	0.26	Orthogroups_2024-Update
Bradi2g54210	No alias	Ribosomal protein S12/S23 family protein	0.26	Orthogroups_2024-Update
Brara.A03520.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.13	Orthogroups_2024-Update
Brara.B00072.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.31	Orthogroups_2024-Update
Brara.C00091.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.25	Orthogroups_2024-Update
Brara.C03262.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.14	Orthogroups_2024-Update
Brara.J02847.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.23	Orthogroups_2024-Update
Cre12.g504200	No alias	Ribosomal protein S12/S23 family protein	0.21	Orthogroups_2024-Update
GRMZM2G084465	No alias	Ribosomal protein S12/S23 family protein	0.03	Orthogroups_2024-Update
GRMZM2G140609	No alias	Ribosomal protein S12/S23 family protein	0.04	Orthogroups_2024-Update
Glyma.03G178000	No alias	Ribosomal protein S12/S23 family protein	0.05	Orthogroups_2024-Update
Glyma.10G049400	No alias	Ribosomal protein S12/S23 family protein	0.23	Orthogroups_2024-Update
Glyma.13G137100	No alias	Ribosomal protein S12/S23 family protein	0.2	Orthogroups_2024-Update
Glyma.19G178800	No alias	Ribosomal protein S12/S23 family protein	0.16	Orthogroups_2024-Update
HORVU1Hr1G071570.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.2	Orthogroups_2024-Update
HORVU3Hr1G087380.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.13	Orthogroups_2024-Update
HORVU5Hr1G066080.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.13	Orthogroups_2024-Update
HORVU5Hr1G112390.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Kfl00077_0130	kfl00077_0130_v1.1	(p46297\|rs23_fraan : 274.0) 40S ribosomal protein S23...	0.1	Orthogroups_2024-Update
LOC_Os03g60400	No alias	40S ribosomal protein S23, putative, expressed	0.03	Orthogroups_2024-Update
MA_10436470g0020	No alias	(p46297\|rs23_fraan : 282.0) 40S ribosomal protein S23...	0.11	Orthogroups_2024-Update
Mp2g08680.1	No alias	component RPS23 of SSU proteome	0.09	Orthogroups_2024-Update
PSME_00017761-RA	No alias	(p46297\|rs23_fraan : 278.0) 40S ribosomal protein S23...	0.13	Orthogroups_2024-Update
PSME_00017762-RA	No alias	(p46297\|rs23_fraan : 282.0) 40S ribosomal protein S23...	0.07	Orthogroups_2024-Update
Potri.006G131500	No alias	Ribosomal protein S12/S23 family protein	0.07	Orthogroups_2024-Update
Potri.008G044400	No alias	Ribosomal protein S12/S23 family protein	0.1	Orthogroups_2024-Update
Potri.010G217100	No alias	Ribosomal protein S12/S23 family protein	0.05	Orthogroups_2024-Update
Potri.016G085800	No alias	Ribosomal protein S12/S23 family protein	0.03	Orthogroups_2024-Update
Pp1s135_33V6	No alias	40s ribosomal protein s23	0.26	Orthogroups_2024-Update
Pp1s264_73V6	No alias	40s ribosomal protein s23	0.11	Orthogroups_2024-Update
Pp1s287_20V6	No alias	40s ribosomal protein s23	0.22	Orthogroups_2024-Update
Pp1s372_2V6	No alias	40s ribosomal protein s23	0.1	Orthogroups_2024-Update
Pp1s61_268V6	No alias	40s ribosomal protein s23	0.21	Orthogroups_2024-Update
Seita.3G213400.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.32	Orthogroups_2024-Update
Seita.5G371300.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.31	Orthogroups_2024-Update
Seita.9G035900.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Sobic.001G036900.1	No alias	component *(uS12) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Solyc09g007350	No alias	Ribosomal protein S12 (AHRD V3.3 *** A0A059LPB2_9CHLO)	0.26	Orthogroups_2024-Update
Solyc10g084310	No alias	Ribosomal protein S12 (AHRD V3.3 *** A0A059LPB2_9CHLO)	0.04	Orthogroups_2024-Update
Solyc10g086020	No alias	interactor of constitutive active ROPs 3	0.28	Orthogroups_2024-Update
Sopen09g002250	No alias	Ribosomal protein S12/S23	0.37	Orthogroups_2024-Update
Sopen10g033750	No alias	Ribosomal protein S12/S23	0.07	Orthogroups_2024-Update
Sopen10g035390	No alias	Ribosomal protein S12/S23	0.23	Orthogroups_2024-Update
evm.model.contig_4434.4	No alias	(p46297\|rs23_fraan : 218.0) 40S ribosomal protein S23...	0.35	Orthogroups_2024-Update
evm.model.tig00001264.27	No alias	(at5g02960 : 160.0) Ribosomal protein S12/S23 family...	0.13	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
BP	GO:0006325	chromatin organization	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
BP	GO:0009451	RNA modification	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022607	cellular component assembly	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
MF	GO:0031267	small GTPase binding	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0043933	protein-containing complex subunit organization	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
BP	GO:0065003	protein-containing complex assembly	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR006032	Ribosomal_S12/S23	31	141

External Links

No external refs found!

Sobic.009G166500.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation