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  5. Sobic.009G170100.1

Sobic.009G170100.1


Description : plant-specific ALOG-type transcription factor


Gene families : OG_42_0000294 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000294_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.009G170100.1
Cluster HCAA Clusters: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
At1g78815 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7... 0.03 Orthogroups_2024-Update
Brara.B02341.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
Brara.B03520.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
Brara.D01881.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
Brara.E01235.1 No alias plant-specific ALOG-type transcription factor 0.02 Orthogroups_2024-Update
Brara.F02899.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
Brara.G00513.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
PSME_00040596-RA No alias (at2g31160 : 184.0) LIGHT SENSITIVE HYPOCOTYLS 3 (LSH3);... 0.03 Orthogroups_2024-Update
Sobic.001G219400.1 No alias plant-specific ALOG-type transcription factor 0.03 Orthogroups_2024-Update
Solyc10g008000 No alias LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005811 lipid droplet IEP Predicted GO
BP GO:0006405 RNA export from nucleus IEP Predicted GO
BP GO:0006406 mRNA export from nucleus IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
CC GO:0012511 monolayer-surrounded lipid storage body IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0050657 nucleic acid transport IEP Predicted GO
BP GO:0050658 RNA transport IEP Predicted GO
BP GO:0051028 mRNA transport IEP Predicted GO
BP GO:0051168 nuclear export IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051236 establishment of RNA localization IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR006936 ALOG_dom 56 178
No external refs found!